I see no mention of the joist spacing under your subfloor, Kippee. Do tell what that dimension is.
The crack isolation under only the replaced tiles will be of no real value to you. The manufacturers generally require the isolation membrane be
a minimum of three tile widths centered over the crack in the substrate.
Here is a drawing of the requirement from one of the best manufacturers of such products.
And that applies only if your problem
does not involve the substrate raising on one side of the crack more than on the other. No manufacture of crack isolation products will give you any sort of warranty if such is the case. Their products are to protect against in-plane separation only and I'm not at all sure that's what you're dealing with.
You'd do better to correct the problem at the source, much as you may not like that option.
My opinion; worth price charged.