You've got a bit of a problem there.
The proper way to join two sheets of backerboard requires taping the seam with alkali-resistant fiberglass tape and then filling the joint and covering the tape with thinset. The fiberglass adds tensile strength to the joint.
But, as you realize, there is no way to get the tape into position over a backerboard joint that is flush with the edge of the tile. And without the tape, the tile grout joint that falls right over the backerboard joint (it has to since the old tile ends a the joint) is almost guaranteed to crack.
Since you are replacing the tub, don't you really want a new surround, too?
And, BTW, is there a vapor barrier in there somewhere? It would either be a sheet of plastic or tar paper behind the backerboard and over the tub flange, or a film that was "painted" onto the backerboard before the tile was installed?
As usual, any pictures you have or can take and post would be very helpful. As some of the old-timers are fond of saying, "It's hard to see from here."