Welcome, Matt.
Hope you did a lot of research before you elected to use that marble in a shower.
I certainly can't argue with Rich's thinking here. You definitely want to do some testing before you commit.
One thing I would suggest in your testing is that you try a grout release, rather than a penetrating sealer, prior to grouting. And I think you'd want to be very cautious about using a sealer on the marble in that application at all.
If you'll type marble shower, just those two words, into the Advanced Search feature and do some browsing, you might get a better idea what sorts of problems you might encounter with your shower. Sealing might not be a good move at all, but I really think you'll need to do some testing. Perhaps in a small area of the completed shower, even, after you've finished grouting and put it into service.
The Flexcolor CQ should go into those 1/16ths" joints with just a little effort. Whether it will scratch your tile surface, I cannot say. Again, some testing is in order.
My opinion; worth price charged.